Publications & References

Selected Publications

 

[RKL98b] M. Rarey, B. Kramer, and T. Lengauer
Docking of hydrophobic ligands with interaction-based matching algorithms
Bioinformatics, in press, 1999  

[RKL98] M. Rarey, B. Kramer, and T. Lengauer
The particle concept: Placing discrete water molecules during protein-ligand docking predictions
PROTEINS: Structure, Functions, and Genetics, Vol. 34, pp. 17-28, 1999  

[RL98] B. Kramer, M. Rarey and T. Lengauer
CASP-2 experiences with docking flexible ligands using FlexX
PROTEINS: Structure, Functions, and Genetics, Suppl. 1:1, pp. 221-225, 1997
 

[KL97] M. Rarey, B. Kramer, and T. Lengauer
Multiple automatic base selection: Protein-ligand docking based on incremental construction without manual intervention
Journal of Computer-Aided Molecular Design, Vol. 11, pp. 369-384, 1997
 

[L97] C. Lemmen and T. Lengauer
Time-efficient flexible superposition of medium-sized molecules
Journal of Computer-Aided Molecular Design, Vol. 11, pp. 357-368, 1997
 

[RWL96] M. Rarey, S. Wefing, and T. Lengauer
Placement of medium-sized molecular fragments into active sites of proteins
Journal of Computer-Aided Molecular Design, Vol. 10, pp. 41-54, 1996
 

[RWL95] M. Rarey, S. Wefing, and T. Lengauer
Time-Efficient Docking of Flexible Ligands into Active Sites of Proteins
In: RAWLINGS, C. ET AL.(Editors): Proceedings of the Third International Conference on Intellegent Systems in Molecular Biology, pp. 300-308. AAAI Press, Menlo Park, California, 1995
 

[RKL96] M. Rarey, B. Kramer, T. Lengauer, and G. Klebe
Predicting Receptor-Ligand Interactions by an Incremental Construction Algorithm
Journal of Molecular Biology, Vol. 261/ 3, pp. 470-489, 1996
 

[LR96] T. Lengauer and M. Rarey
Computational Methods for Biomolecular Docking
Current Opinion in Structural Biology, Vol. 6, pp. 402-406, 1996

References

 

[BKW77] F.C. Bernstein, T.F. Koetzle, G.J.B. Williams, E.F. Jr. Meyer, M.D. Brice, J.R. Rodgers, O.Kennard, T. Shimanouchi, and M. Tasumi
The protein data bank: a computer based archival file for macromolecular structures
Journal of Molecular Biology, Vol. 112, pp. 535-542, 1977
 

[B94] H.Böhm
The development of a simple empirical scoring function to estimate the binding constant for a protein-ligand complex of known three-dimensional structure
Journal of Computer-Aided Molecular Design, Vol. 8, pp. 243-256, 1994
 

[HC88] J.Hoflack and P.J. De Clercq
The SCA program: An easy way for the conformational evaluation of polycyclic molecules
Tetrahedron, Vol. 44, pp. 6667, 1988
 

[HCC89] J. Hoflack, P.J. De Clercq, and S. Cauberghs
SCA: Systematic conformational analysis
Quantum Chemical Program Exchange, Program QCMP079, 1989
 

[K94] G.Klebe
The use of composite crystal-field enviroments in molecular recognition and the de-novo design of protein ligands
Journal of Molecular Biology, Vol. 237, pp. 221-235, 1994
 

[KM94] G. Klebe and T. Mietzner
A fast and efficient method to generate biologically relevant conformations
Journal of Computer-Aided Molecular Design, Vol. 8, pp. 583-606, 1994
 

[K93] H. Kubinyi, editor
3D QSAR in Drug Design. Theory, Methods and Applications
ESCOM Science Publishers, Leiden, 1993
 

[S88] L. Stryer
Biochemistry
W.H. Freeman and Company, New York, 1988

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